Detailed information of SNP:
|
SNP ID:
sf0317960391(Gbrowse)
Chromosome: chr03 Position: 17960391 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 97.25% | 2.75% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 494 | 94.74% | 5.26% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 91 | 76.92% | 23.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317960391 | G->A | LOC_Os03g31530(LOC_Os03g31530.1) | Non-Synonymous SNP |