Detailed information of SNP:
|
SNP ID:
sf0317960904(Gbrowse)
Chromosome: chr03 Position: 17960904 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 59.45% | 40.55% |
| All Indica | 764 | 93.32% | 6.68% |
| All Japonica | 496 | 6.65% | 93.35% |
| Aus | 62 | 83.87% | 16.13% |
| Indica I | 354 | 92.37% | 7.63% |
| Indica II | 207 | 92.75% | 7.25% |
| Indica Intermediate | 203 | 95.57% | 4.43% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317960904 | T->C | LOC_Os03g31530(LOC_Os03g31530.1) | INTRON |