Detailed information of SNP:
|
SNP ID:
sf0317961231(Gbrowse)
Chromosome: chr03 Position: 17961231 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1312 | 55.87% | 44.13% |
| All Indica | 693 | 95.96% | 4.04% |
| All Japonica | 497 | 7.24% | 92.76% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 314 | 94.90% | 5.10% |
| Indica II | 200 | 95.50% | 4.50% |
| Indica Intermediate | 179 | 98.32% | 1.68% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317961231 | A->G | LOC_Os03g31530(LOC_Os03g31530.1) | Non-Synonymous SNP |