Detailed information of SNP:



SNP ID: sf0317961366(Gbrowse)

Chromosome: chr03

Position: 17961366
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1419 97.96% 2.04%
All Indica799 100.00% 0.00%
All Japonica497 94.37% 5.63%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 98.51% 1.49%
Tropical Japonica94 82.98% 17.02%
Japonica Intermediate68 89.71% 10.29%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0317961366 T->C LOC_Os03g31530(LOC_Os03g31530.1) Non-Synonymous SNP