Detailed information of SNP:
|
SNP ID:
sf0317964259(Gbrowse)
Chromosome: chr03 Position: 17964259 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 56.60% | 43.40% |
| All Indica | 797 | 92.97% | 7.03% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317964259 | G->A | INTERGENIC | None |