Detailed information of SNP:
|
SNP ID:
sf0317982258(Gbrowse)
Chromosome: chr03 Position: 17982258 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 56.70% | 43.30% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 475 | 1.05% | 98.95% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 74 | 6.76% | 93.24% |
| Japonica Intermediate | 66 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317982258 | C->T | LOC_Os03g31546(LOC_Os03g31546.1) | SNPs that introduce stop codons |