Detailed information of SNP:
|
SNP ID:
sf0318000279(Gbrowse)
Chromosome: chr03 Position: 18000279 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1149 | 79.72% | 20.28% |
| All Indica | 566 | 68.73% | 31.27% |
| All Japonica | 489 | 97.14% | 2.86% |
| Aus | 48 | 27.08% | 72.92% |
| Indica I | 247 | 78.14% | 21.86% |
| Indica II | 172 | 56.98% | 43.02% |
| Indica Intermediate | 147 | 66.67% | 33.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 87 | 86.21% | 13.79% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 32 | 78.12% | 21.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318000279 | C->T | INTERGENIC | None |