Detailed information of SNP:
|
SNP ID:
sf0318009433(Gbrowse)
Chromosome: chr03 Position: 18009433 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 70.62% | 29.38% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 495 | 24.04% | 75.96% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 20.60% | 79.40% |
| Tropical Japonica | 92 | 36.96% | 63.04% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318009433 | A->T | LOC_Os03g31560(LOC_Os03g31560.1) | Non-Synonymous SNP |