Detailed information of SNP:
|
SNP ID:
sf0318044325(Gbrowse)
Chromosome: chr03 Position: 18044325 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 58.20% | 41.80% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 483 | 1.04% | 98.96% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 86 | 4.65% | 95.35% |
| Japonica Intermediate | 62 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318044325 | T->C | INTERGENIC | None |