Detailed information of SNP:
|
SNP ID:
sf0318050418(Gbrowse)
Chromosome: chr03 Position: 18050418 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 53.98% | 46.02% |
| All Indica | 799 | 92.12% | 7.88% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318050418 | G->A | INTERGENIC | None |