Detailed information of SNP:
|
SNP ID:
sf0318055530(Gbrowse)
Chromosome: chr03 Position: 18055530 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1352 | 51.04% | 48.96% |
| All Indica | 733 | 14.05% | 85.95% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 342 | 14.04% | 85.96% |
| Indica II | 196 | 15.31% | 84.69% |
| Indica Intermediate | 195 | 12.82% | 87.18% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318055530 | A->G | INTERGENIC | None |