Detailed information of SNP:
|
SNP ID:
sf0318060211(Gbrowse)
Chromosome: chr03 Position: 18060211 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1347 | 57.54% | 42.46% |
| All Indica | 759 | 91.57% | 8.43% |
| All Japonica | 496 | 6.45% | 93.55% |
| Aus | 37 | 59.46% | 40.54% |
| Indica I | 353 | 90.37% | 9.63% |
| Indica II | 206 | 93.69% | 6.31% |
| Indica Intermediate | 200 | 91.50% | 8.50% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 32.26% | 67.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318060211 | C->T | INTERGENIC | None |