Detailed information of SNP:
|
SNP ID:
sf0318073504(Gbrowse)
Chromosome: chr03 Position: 18073504 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 53.13% | 46.87% |
| All Indica | 769 | 18.60% | 81.40% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 354 | 19.77% | 80.23% |
| Indica II | 211 | 15.17% | 84.83% |
| Indica Intermediate | 204 | 20.10% | 79.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318073504 | G->A | LOC_Os03g31650(LOC_Os03g31650.1) | Non-Synonymous SNP |