Detailed information of SNP:
|
SNP ID:
sf0318101905(Gbrowse)
Chromosome: chr03 Position: 18101905 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 57.97% | 42.03% |
| All Indica | 798 | 28.70% | 71.30% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 40.11% | 59.89% |
| Indica II | 213 | 14.55% | 85.45% |
| Indica Intermediate | 211 | 22.75% | 77.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318101905 | C->G | INTERGENIC | None |