Detailed information of SNP:
|
SNP ID:
sf0318125174(Gbrowse)
Chromosome: chr03 Position: 18125174 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 61.78% | 38.22% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 496 | 6.05% | 93.95% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 30.11% | 69.89% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318125174 | C->T | LOC_Os03g31730(LOC_Os03g31730.1) | INTRON |