Detailed information of SNP:
|
SNP ID:
sf0318145760(Gbrowse)
Chromosome: chr03 Position: 18145760 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 74.95% | 25.05% |
| All Indica | 798 | 66.67% | 33.33% |
| All Japonica | 496 | 94.15% | 5.85% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 60.53% | 39.47% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 210 | 71.43% | 28.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 70.97% | 29.03% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318145760 | G->A | INTERGENIC | None |