Detailed information of SNP:
|
SNP ID:
sf0318146450(Gbrowse)
Chromosome: chr03 Position: 18146450 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 51.56% | 48.44% |
| All Indica | 797 | 21.33% | 78.67% |
| All Japonica | 494 | 93.93% | 6.07% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 33.16% | 66.84% |
| Indica II | 213 | 6.57% | 93.43% |
| Indica Intermediate | 210 | 15.24% | 84.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318146450 | T->C | INTERGENIC | None |