Detailed information of SNP:
|
SNP ID:
sf0318163980(Gbrowse)
Chromosome: chr03 Position: 18163980 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 57.69% | 42.31% |
| All Indica | 798 | 88.85% | 11.15% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 88.50% | 11.50% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318163980 | G->T | INTERGENIC | None |