Detailed information of SNP:
|
SNP ID:
sf0318165782(Gbrowse)
Chromosome: chr03 Position: 18165782 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1222 | 87.89% | 12.11% |
| All Indica | 796 | 99.75% | 0.25% |
| All Japonica | 306 | 53.59% | 46.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 178 | 28.65% | 71.35% |
| Tropical Japonica | 78 | 91.03% | 8.97% |
| Japonica Intermediate | 50 | 84.00% | 16.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318165782 | A->G | LOC_Os03g31760(LOC_Os03g31760.1) | UTR_3_PRIME |