Detailed information of SNP:
|
SNP ID:
sf0318175052(Gbrowse)
Chromosome: chr03 Position: 18175052 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1257 | 58.55% | 41.45% |
| All Indica | 643 | 97.20% | 2.80% |
| All Japonica | 496 | 6.05% | 93.95% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 260 | 97.69% | 2.31% |
| Indica II | 203 | 96.06% | 3.94% |
| Indica Intermediate | 180 | 97.78% | 2.22% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 30.11% | 69.89% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 47.37% | 52.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318175052 | C->G | INTERGENIC | None |