Detailed information of SNP:
|
SNP ID:
sf0318192089(Gbrowse)
Chromosome: chr03 Position: 18192089 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 57.31% | 42.69% |
| All Indica | 785 | 88.41% | 11.59% |
| All Japonica | 496 | 6.05% | 93.95% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 364 | 87.09% | 12.91% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 29.03% | 70.97% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318192089 | C->T | INTERGENIC | None |