Detailed information of SNP:
|
SNP ID:
sf0318193992(Gbrowse)
Chromosome: chr03 Position: 18193992 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 64.27% | 35.73% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 497 | 7.24% | 92.76% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318193992 | T->C | INTERGENIC | None |