Detailed information of SNP:
|
SNP ID:
sf0318240446(Gbrowse)
Chromosome: chr03 Position: 18240446 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 59.53% | 40.47% |
| All Indica | 797 | 89.71% | 10.29% |
| All Japonica | 497 | 8.05% | 91.95% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 91.15% | 8.85% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318240446 | T->C | INTERGENIC | None |