Detailed information of SNP:
|
SNP ID:
sf0318241228(Gbrowse)
Chromosome: chr03 Position: 18241228 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 60.68% | 39.32% |
| All Indica | 797 | 92.85% | 7.15% |
| All Japonica | 491 | 6.31% | 93.69% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 62 | 1.61% | 98.39% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318241228 | A->G | INTERGENIC | None |