Detailed information of SNP:
|
SNP ID:
sf0318241541(Gbrowse)
Chromosome: chr03 Position: 18241541 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 59.76% | 40.24% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318241541 | G->A | LOC_Os03g31890(LOC_Os03g31890.1) | Non-Synonymous SNP |