Detailed information of SNP:
|
SNP ID:
sf0318241574(Gbrowse)
Chromosome: chr03 Position: 18241574 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 56.68% | 43.32% |
| All Indica | 789 | 87.33% | 12.67% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 371 | 87.60% | 12.40% |
| Indica II | 211 | 87.20% | 12.80% |
| Indica Intermediate | 207 | 86.96% | 13.04% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318241574 | A->T | LOC_Os03g31890(LOC_Os03g31890.1) | Non-Synonymous SNP |