Detailed information of SNP:



SNP ID: sf0318241791(Gbrowse)

Chromosome: chr03

Position: 18241791
Major allele: A

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1391 53.27% 46.73%
All Indica776 79.25% 20.75%
All Japonica494 8.10% 91.90%
Aus67 94.03% 5.97%
Indica I360 80.28% 19.72%
Indica II211 83.89% 16.11%
Indica Intermediate205 72.68% 27.32%
Temperate Japonica335 0.90% 99.10%
Tropical Japonica94 32.98% 67.02%
Japonica Intermediate65 9.23% 90.77%
Group VI/Aromatic14 7.14% 92.86%
Intermediate40 55.00% 45.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0318241791 G->A LOC_Os03g31890(LOC_Os03g31890.1) Synonymous