Detailed information of SNP:
|
SNP ID:
sf0318241791(Gbrowse)
Chromosome: chr03 Position: 18241791 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 53.27% | 46.73% |
| All Indica | 776 | 79.25% | 20.75% |
| All Japonica | 494 | 8.10% | 91.90% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 360 | 80.28% | 19.72% |
| Indica II | 211 | 83.89% | 16.11% |
| Indica Intermediate | 205 | 72.68% | 27.32% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 65 | 9.23% | 90.77% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318241791 | G->A | LOC_Os03g31890(LOC_Os03g31890.1) | Synonymous |