Detailed information of SNP:
|
SNP ID:
sf0318241916(Gbrowse)
Chromosome: chr03 Position: 18241916 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 95.76% | 4.24% |
| All Indica | 774 | 93.02% | 6.98% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 92.58% | 7.42% |
| Indica II | 206 | 97.09% | 2.91% |
| Indica Intermediate | 204 | 89.71% | 10.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318241916 | C->T | LOC_Os03g31890(LOC_Os03g31890.1) | Non-Synonymous SNP |