Detailed information of SNP:
|
SNP ID:
sf0318243466(Gbrowse)
Chromosome: chr03 Position: 18243466 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1312 | 91.31% | 8.69% |
| All Indica | 720 | 87.64% | 12.36% |
| All Japonica | 482 | 98.13% | 1.87% |
| Aus | 56 | 83.93% | 16.07% |
| Indica I | 339 | 85.25% | 14.75% |
| Indica II | 190 | 91.05% | 8.95% |
| Indica Intermediate | 191 | 88.48% | 11.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 80 | 90.00% | 10.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318243466 | A->G | LOC_Os03g31890(LOC_Os03g31890.1) | Non-Synonymous SNP |