Detailed information of SNP:
|
SNP ID:
sf0318270629(Gbrowse)
Chromosome: chr03 Position: 18270629 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1300 | 96.38% | 3.62% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 384 | 88.02% | 11.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 255 | 82.75% | 17.25% |
| Tropical Japonica | 76 | 98.68% | 1.32% |
| Japonica Intermediate | 53 | 98.11% | 1.89% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318270629 | A->T | INTERGENIC | None |