Detailed information of SNP:
|
SNP ID:
sf0318300773(Gbrowse)
Chromosome: chr03 Position: 18300773 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 63.05% | 36.95% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 7.44% | 92.56% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318300773 | A->G | INTERGENIC | None |