Detailed information of SNP:
|
SNP ID:
sf0318330428(Gbrowse)
Chromosome: chr03 Position: 18330428 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 89.77% | 10.23% |
| All Indica | 798 | 86.22% | 13.78% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318330428 | C->T | LOC_Os03g32050(LOC_Os03g32050.1) | INTRON |