Detailed information of SNP:
|
SNP ID:
sf0318337184(Gbrowse)
Chromosome: chr03 Position: 18337184 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 93.98% | 6.02% |
| All Indica | 793 | 89.91% | 10.09% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 90.30% | 9.70% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 209 | 83.25% | 16.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318337184 | G->T | LOC_Os03g32070(LOC_Os03g32070.1) | Non-Synonymous SNP |