Detailed information of SNP:
|
SNP ID:
sf0318417992(Gbrowse)
Chromosome: chr03 Position: 18417992 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1325 | 59.32% | 40.68% |
| All Indica | 711 | 94.51% | 5.49% |
| All Japonica | 496 | 7.46% | 92.54% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 321 | 95.64% | 4.36% |
| Indica II | 206 | 93.69% | 6.31% |
| Indica Intermediate | 184 | 93.48% | 6.52% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318417992 | A->G | INTERGENIC | None |