Detailed information of SNP:
|
SNP ID:
sf0318446784(Gbrowse)
Chromosome: chr03 Position: 18446784 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.35% | 41.65% |
| All Indica | 799 | 89.99% | 10.01% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318446784 | A->T | INTERGENIC | None |