Detailed information of SNP:
|
SNP ID:
sf0318509694(Gbrowse)
Chromosome: chr03 Position: 18509694 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1296 | 92.59% | 7.41% |
| All Indica | 681 | 86.20% | 13.80% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 308 | 86.36% | 13.64% |
| Indica II | 192 | 84.38% | 15.62% |
| Indica Intermediate | 181 | 87.85% | 12.15% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318509694 | G->A | LOC_Os03g32350(LOC_Os03g32350.1) | INTRON |