Detailed information of SNP:
|
SNP ID:
sf0318522028(Gbrowse)
Chromosome: chr03 Position: 18522028 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1246 | 57.70% | 42.30% |
| All Indica | 654 | 95.87% | 4.13% |
| All Japonica | 483 | 4.55% | 95.45% |
| Aus | 57 | 91.23% | 8.77% |
| Indica I | 291 | 96.56% | 3.44% |
| Indica II | 190 | 94.74% | 5.26% |
| Indica Intermediate | 173 | 95.95% | 4.05% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 85 | 22.35% | 77.65% |
| Japonica Intermediate | 63 | 3.17% | 96.83% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 44.74% | 55.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318522028 | T->C | LOC_Os03g32380(LOC_Os03g32380.1) | Non-Synonymous SNP |