Detailed information of SNP:
|
SNP ID:
sf0318533421(Gbrowse)
Chromosome: chr03 Position: 18533421 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 62.55% | 37.45% |
| All Indica | 798 | 95.61% | 4.39% |
| All Japonica | 497 | 7.85% | 92.15% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318533421 | T->C | INTERGENIC | None |