Detailed information of SNP:
|
SNP ID:
sf0318541574(Gbrowse)
Chromosome: chr03 Position: 18541574 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 59.83% | 40.17% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 497 | 6.44% | 93.56% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318541574 | C->T | INTERGENIC | None |