Detailed information of SNP:
|
SNP ID:
sf0318564789(Gbrowse)
Chromosome: chr03 Position: 18564789 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 92.47% | 7.53% |
| All Indica | 763 | 90.83% | 9.17% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 93.46% | 6.54% |
| Indica II | 193 | 86.01% | 13.99% |
| Indica Intermediate | 203 | 90.64% | 9.36% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318564789 | C->T | INTERGENIC | None |