Detailed information of SNP:
|
SNP ID:
sf0318672473(Gbrowse)
Chromosome: chr03 Position: 18672473 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 52.89% | 47.11% |
| All Indica | 798 | 83.96% | 16.04% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 212 | 73.11% | 26.89% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318672473 | G->A | INTERGENIC | None |