Detailed information of SNP:
|
SNP ID:
sf0318689778(Gbrowse)
Chromosome: chr03 Position: 18689778 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 93.67% | 6.33% |
| All Indica | 788 | 94.16% | 5.84% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 64 | 40.62% | 59.38% |
| Indica I | 367 | 95.10% | 4.90% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318689778 | G->A | INTERGENIC | None |