Detailed information of SNP:
|
SNP ID:
sf0318699122(Gbrowse)
Chromosome: chr03 Position: 18699122 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1365 | 98.02% | 1.98% |
| All Indica | 752 | 96.81% | 3.19% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 61 | 96.72% | 3.28% |
| Indica I | 354 | 97.74% | 2.26% |
| Indica II | 198 | 94.44% | 5.56% |
| Indica Intermediate | 200 | 97.50% | 2.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318699122 | A->G | LOC_Os03g32650(LOC_Os03g32650.1) | SNPs that disrupt stop codons |