Detailed information of SNP:
|
SNP ID:
sf0318734525(Gbrowse)
Chromosome: chr03 Position: 18734525 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1138 | 83.83% | 16.17% |
| All Indica | 564 | 69.68% | 30.32% |
| All Japonica | 482 | 99.38% | 0.62% |
| Aus | 49 | 87.76% | 12.24% |
| Indica I | 267 | 68.54% | 31.46% |
| Indica II | 147 | 68.03% | 31.97% |
| Indica Intermediate | 150 | 73.33% | 26.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 80 | 96.25% | 3.75% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 29 | 86.21% | 13.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318734525 | G->A | LOC_Os03g32700(LOC_Os03g32700.1) | Synonymous |