Detailed information of SNP:
|
SNP ID:
sf0318737205(Gbrowse)
Chromosome: chr03 Position: 18737205 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 56.26% | 43.74% |
| All Indica | 782 | 87.08% | 12.92% |
| All Japonica | 493 | 5.88% | 94.12% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 370 | 84.05% | 15.95% |
| Indica II | 209 | 89.95% | 10.05% |
| Indica Intermediate | 203 | 89.66% | 10.34% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 92 | 27.17% | 72.83% |
| Japonica Intermediate | 66 | 6.06% | 93.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318737205 | G->A | INTERGENIC | None |