Detailed information of SNP:
|
SNP ID:
sf0318740384(Gbrowse)
Chromosome: chr03 Position: 18740384 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1309 | 56.30% | 43.70% |
| All Indica | 715 | 28.11% | 71.89% |
| All Japonica | 480 | 99.17% | 0.83% |
| Aus | 59 | 30.51% | 69.49% |
| Indica I | 332 | 28.61% | 71.39% |
| Indica II | 192 | 26.04% | 73.96% |
| Indica Intermediate | 191 | 29.32% | 70.68% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 78 | 96.15% | 3.85% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318740384 | G->A | INTERGENIC | None |