Detailed information of SNP:
|
SNP ID:
sf0318750428(Gbrowse)
Chromosome: chr03 Position: 18750428 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1368 | 95.61% | 4.39% |
| All Indica | 748 | 91.98% | 8.02% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 335 | 86.27% | 13.73% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 202 | 94.55% | 5.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318750428 | A->C | LOC_Os03g32749(LOC_Os03g32749.1) | Non-Synonymous SNP |