Detailed information of SNP:
|
SNP ID:
sf0318751331(Gbrowse)
Chromosome: chr03 Position: 18751331 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 58.75% | 41.25% |
| All Indica | 790 | 90.51% | 9.49% |
| All Japonica | 493 | 5.88% | 94.12% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 369 | 89.16% | 10.84% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 29.03% | 70.97% |
| Japonica Intermediate | 65 | 3.08% | 96.92% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318751331 | T->C | LOC_Os03g32749(LOC_Os03g32749.1) | Non-Synonymous SNP |