Detailed information of SNP:
|
SNP ID:
sf0318755177(Gbrowse)
Chromosome: chr03 Position: 18755177 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 81.72% | 18.28% |
| All Indica | 776 | 76.29% | 23.71% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 66 | 45.45% | 54.55% |
| Indica I | 359 | 76.04% | 23.96% |
| Indica II | 211 | 75.36% | 24.64% |
| Indica Intermediate | 206 | 77.67% | 22.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318755177 | G->C | INTERGENIC | None |