Detailed information of SNP:
|
SNP ID:
sf0318762599(Gbrowse)
Chromosome: chr03 Position: 18762599 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 58.71% | 41.29% |
| All Indica | 771 | 91.31% | 8.69% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 361 | 93.07% | 6.93% |
| Indica II | 208 | 88.46% | 11.54% |
| Indica Intermediate | 202 | 91.09% | 8.91% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318762599 | A->G | INTERGENIC | None |